http://www.mcinen.net/#/main
Nice site. Clean, smooth animation
http://www.seohiroshi.com/
A little heavy on the load time, but nice animation.
http://www.hellomonday.net
sweet site. Nice interface. Great layout
http://www.26000vodka.com/flash.html
http://www.creativedepart.com/
This site better reflects what I am going to be doing. Its used xhtml, css, and jquery.